Commit 2bdfc400 authored by Wenqi Li's avatar Wenqi Li

fix autocontext_mr_ct readme

parent 9cf469e5
......@@ -24,6 +24,7 @@ python net_run.py train \
## Generating contexts
Command line parameters: ``--spatial_window_size 240,240,1 --batch_size 4``
modify the inference batch size and window size for efficiency purpose.
The contexts will be generated to
``~/niftynet/models/autocontext_mr_ct/autocontext_output``.
```bash
python net_run.py inference \
......@@ -32,7 +33,7 @@ python net_run.py inference \
--inference_iter 500 --spatial_window_size 240,240,1 --batch_size 4 --dataset_split_file nofile
```
## Continue training by sampling according to the error maps:
## Continue training with the latest contexts:
Command line parameters ``--starting_iter -1``
indicate training the model from the most recently saved checkpoint (at iteration 500).
```bash
......@@ -44,7 +45,7 @@ python net_run.py train \
## Combine them together
Alternating in between error map generation and training with new sampling weights:
Alternating in between context generation and training:
(from git cloned source code)
```bash
python net_download.py autocontext_mr_ct_model_zoo
......
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