Commit 4efec436 authored by Wenqi Li's avatar Wenqi Li

fix docs

parent 6d1c634f
......@@ -33,7 +33,7 @@ Make sure that the model directory (`~/niftynet/models/` by default) is on the `
Generate segmentations for the included example image with the command
```bash
net_segment inference -c ~/niftynet/extensions/dense_vnet_abdominal_ct_model_zoo/config.ini
net_segment inference -c ~/niftynet/extensions/dense_vnet_abdominal_ct/config.ini
```
Replace `net_segment` with `python net_segment.py` if you cloned the NiftyNet repository.
......@@ -49,7 +49,7 @@ field-of-view set to -1000.
### Editing the configuration file
Make a copy of the configuration file `~/niftynet/models/dense_vnet_abdominal_ct_model_zoo/config.ini` to a location of your choice.
Make a copy of the configuration file `~/niftynet/extensions/dense_vnet_abdominal_ct/config.ini` to a location of your choice.
You may need to change the `path_to_search` and `filename_contains` lines in the configuration file to point to the correct paths for your images. You can also change the `save_seg_dir` setting to change where the segmentations are saved.
### Generating segmentations
......
......@@ -22,4 +22,8 @@ python net_download.py highres3dnet_brain_parcellation_model_zoo
Generate segmentations for the included example image with the command
```bash
net_segment inference -c ~/niftynet/extensions/highres3dnet_brain_parcellation/highres3dnet_config_eval.ini
```
\ No newline at end of file
```
Replace `net_segment` with `python net_segment.py` if you cloned the NiftyNet repository.
Replace `~/niftynet/` if you specified a custom download path in the `net_download` command.
\ No newline at end of file
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