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CMIC
NiftyNetExampleServer
Commits
e8564ce8
Commit
e8564ce8
authored
Feb 04, 2018
by
Wenqi Li
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hybrid isampler + autocontext
parent
dec04cb5
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hybrid_mr_ct_model_zoo.ini
hybrid_mr_ct_model_zoo.ini
+20
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hybrid_mr_ct_model_zoo.md
hybrid_mr_ct_model_zoo.md
+24
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hybrid_mr_ct_model_zoo.ini
0 → 100644
View file @
e8564ce8
[config]
version
=
1.0
[data]
local_id
=
mr_ct_regression
url
=
https://www.dropbox.com/s/lv31fultntgw66t/mr_ct_regression_model_zoo_data.tar.gz?dl=1
action
=
expand
destination
=
data
[error_maps]
local_id
=
isampler_autocontext_mr_ct
url
=
https://www.dropbox.com/s/xx5ahj4m12bf67h/autocontext_mr_ct_initial_maps.tar.gz?dl=1
action
=
expand
destination
=
models
[code]
local_id
=
isampler_autocontext_mr_ct
url
=
https://www.dropbox.com/s/mq4pgey1zfeai24/isampler_autocontext_mr_ct_model_zoo_config.tar.gz?dl=1
action
=
expand
destination
=
extensions
hybrid_mr_ct_model_zoo.md
0 → 100644
View file @
e8564ce8
```
bash
python net_run.py train
\
-a
niftynet.contrib.regression_weighted_sampler.isample_regression.ISampleRegression
\
-c
/home/wenqi/niftynet/extensions/isampler_autocontext_mr_ct/net_hybrid.ini
\
--starting_iter
0
--max_iter
500
for
max_iter
in
`
seq
1000 1000 10000
`
do
python net_run.py inference
\
-a
niftynet.contrib.regression_weighted_sampler.isample_regression.ISampleRegression
\
-c
~/niftynet/extensions/isampler_autocontext_mr_ct/net_hybrid.ini
\
--inference_iter
-1
--spatial_window_size
240,240,1
--batch_size
4
--dataset_split_file
nofile
python net_run.py inference
\
-a
niftynet.contrib.regression_weighted_sampler.isample_regression.ISampleRegression
\
-c
~/niftynet/extensions/isampler_autocontext_mr_ct/net_hybrid.ini
\
--inference_iter
-1
--spatial_window_size
240,240,1
--batch_size
4
\
--dataset_split_file
nofile
--error_map
True
python net_run.py train
\
-a
niftynet.contrib.regression_weighted_sampler.isample_regression.ISampleRegression
\
-c
~/niftynet/extensions/isampler_autocontext_mr_ct/net_hybrid.ini
\
--starting_iter
-1
--max_iter
$max_iter
done
```
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