GitLab

An open-source convolutional neural networks platform for research in medical image analysis and image-guided therapy

This project contains programs to perform rigid, affine and non-linear registration of nifti or analyse images as well as utilities.

NifTK Medical Imaging Software Platform

Archived Tom's thesis template - This was moved to https://github.com/tvercaut/TomThesisTemplate

calculation of all the important performance metrics

NiftyFit is an open-source software library to facilitate voxel wise fitting on a number of datatypes including T1 and T2 relaxometry, Arterial Spin Labeled MRI, Diffusion Weighted Imaging and Dynamic Contrast Enhanced MRI.

Prebuilt jar file for the cmic-xnat-plugin

Scripts and utility programs for extracting and processing vasculature

Simulates resting- and task-BOLD-fMRI time series.

NifTK IGI Clients - OBSOLETE

docker container for brats

GPU/Python infrastructure for PET image reconstruction and analysis. In its first realise it includes all the tools for processing the mMR list-mode data including generation of bootstrap replications.

A utility for splitting very large image volumes into multiple overlapping sub-volumes, recombining and converting data types.