Commit f3ef2366 authored by Kevin Bronik's avatar Kevin Bronik

Update README.md

parent 44671830
......@@ -30,9 +30,22 @@ Use one of the following methods to run the program:
```sh
- chmod 755 RunMe.sh
- ./RunMe.sh <lesionmask> <threshold> <manualmask> <foldershortname> <modelname> <distancefunction> <factor> <symmetry> <weight> <p_norm> <saveoutput>
- ./RunMe.sh <lesionmask> <threshold> <manualmask> <foldershortname> <modelname> <distancefunction> <factor/operation> <symmetry> <weight> <p_norm> <saveoutput>
or
- bash RunMe.sh <lesionmask> <threshold> <manualmask> <foldershortname> <modelname> <distancefunction> <factor> <symmetry> <weight> <p_norm> <saveoutput>
- bash RunMe.sh <lesionmask> <threshold> <manualmask> <foldershortname> <modelname> <distancefunction> <factor/operation> <symmetry> <weight> <p_norm> <saveoutput>
```
where
```sh
- <lesionmask>: Segmented lesion mask using lesion prediction algorithm
- <threshold>: Probability threshold that will be applied to output before calculation of the overlap measures
- <manualmask>: The manual segmentation
- <foldershortname>
- <modelname>
- <distancefunction>
- <factor/operation>
- <symmetry>
- <weight>
- <p_norm>
- <saveoutput>
```
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